As the basic settlement of human beings, the governance effect of rural areas is directly related to the order of production and life. The key to ensuring the long-term stability of rural society is to promote the integration of rural governance system with autonomy and rule of virtue based on the framework of rule by law. In the current rural social field, the rule of law is still marginalized, and the phenomenon of "disenchantment with knowledge" is widespread. Therefore, although the rule of law of rural governance has been significantly promoted, the operation of rural governance system is still not smooth enough. Therefore, on the basis of continuing to promote the transformation of rural governance under the rule of law, it is necessary to further promote the integration of rural governance with "autonomy" and "rule by virtue", so as to drive the stable, coordinated and long-term development of rural society.